PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.18G072400.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ARF
Protein Properties Length: 594aa    MW: 65703.1 Da    PI: 5.9587
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.18G072400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.66.6e-25123224199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f k+ltpsd+++ g +++p+ +a+++        +++ +  tlt++d +g +W++++iyr++++r++lt+GW++Fv+ ++L +gD+vvF+
  Manes.18G072400.1.p 123 FAKILTPSDANNGGGFSVPRFCADSIfpplnyqAEPPVQ--TLTVTDIHGVTWDFRHIYRGTPRRHLLTTGWSKFVNHKKLIAGDSVVFM 210
                          89*********************999****985444444..9************************************************ PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                            ++  +e++++v+r+
  Manes.18G072400.1.p 211 --RNLAGEMFIGVRRA 224
                          ..5689999****996 PP

2Auxin_resp84.32.5e-28272356183
           Auxin_resp   1 aahaastksvFevvYnPrast.seFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                          a+++a+++ +FevvY+Pra++ s+Fvvk+  ve+al+v +++GmR+kma+etedss+ ++ +Gt+++ s  +   W+ S+Wr+L+
  Manes.18G072400.1.p 272 AVERATQGLPFEVVYYPRAGWySDFVVKATLVERALNVFWTAGMRVKMAMETEDSSRMTWfQGTISSASVPECGPWRFSPWRMLQ 356
                          678999*************9779************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-34116233IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-31118242IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.2E-20123225IPR003340B3 DNA binding domain
PfamPF023623.5E-22123224IPR003340B3 DNA binding domain
PROSITE profilePS5086312.506123225IPR003340B3 DNA binding domain
CDDcd100176.08E-21123223No hitNo description
PfamPF065077.4E-26272356IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MPPLPPSSDL RRLDPRIWRA CAGSSVHIPT VNSRVYYFPQ GHLEQYSSSA SNNVSALARS  60
IPFIPCHISA VQFLADPVTD EVYTKLHLYP IDPPLNQSLS MMESSARPER EGADDDEDKI  120
VAFAKILTPS DANNGGGFSV PRFCADSIFP PLNYQAEPPV QTLTVTDIHG VTWDFRHIYR  180
GTPRRHLLTT GWSKFVNHKK LIAGDSVVFM RNLAGEMFIG VRRAVRSNNG SDCARWREQI  240
GCGTGDVKIK VKDEGFSRSG RGRVSQEAVM EAVERATQGL PFEVVYYPRA GWYSDFVVKA  300
TLVERALNVF WTAGMRVKMA METEDSSRMT WFQGTISSAS VPECGPWRFS PWRMLQITWD  360
EPEVLQIAKR VSPWQVEILA PAPPIHAAFP PAKRFKFPEN SGLQTDGKGE LFFPMSGLSN  420
STIGNVNQSL LNYNIFPAGM QGARQDPFSI FGLSNFLSEN ASQICPDNVF DNKMVPKLET  480
VSTELNIGSS QSDNLTPNSQ SSVHFFATEL VGNPGCNSAK VGVDSFQLFG QIIHMNQPVE  540
SGFDDVGYMR DYGSKEYTEN NPPDLALASS YTELLNRIDV QHQGASAVES CSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A2e-651737923355Auxin response factor 1
4ldy_B2e-651737923355Auxin response factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012078139.10.0PREDICTED: auxin response factor 17
SwissprotQ84WU60.0ARFQ_ARATH; Auxin response factor 17
TrEMBLA0A067KCM50.0A0A067KCM5_JATCU; Auxin response factor
STRINGPOPTR_0002s09050.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40303056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.10.0auxin response factor 17